Package: bridger2 0.1.0

bridger2: Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data

BRIC-seq is a genome-wide approach for determining RNA stability in mammalian cells. This package provides a series of functions for performing quality check of your BRIC-seq data, calculation of RNA half-life for each transcript and comparison of RNA half-lives between two conditions.

Authors:Naoto Imamachi [aut, cre]

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Peer review:

Bug tracker:https://github.com/imamachi-n/bridger2/issues

On CRAN:

bioinformaticsbric-seqhalf-lifengsrnarpkm-values

14 exports 3 stars 0.93 score 82 dependencies 18 scripts 255 downloads

Last updated 8 years agofrom:18640622a6. Checks:OK: 7. Indexed: yes.

Exports:BridgeRCoreBridgeRDatasetCheckerBridgeRDataSetFromMatrixBridgeRDataSetFromRawBridgeReportBridgeRGrubbsTestBridgeRHalfLifeCalc3modelsBridgeRHalfLifeCalcR2SelectBridgeRNormalizationBridgeRNormalizationFactorsBridgeRNormalizationFactorsHKBridgeRPvalueEvaluationBridgeRResultCheckerCalcHalflifeDeviation

Dependencies:askpassbase64encBSDAbslibcachemclassclicolorspacecommonmarkcpp11crayoncrosstalkcurldata.tabledigestdplyre1071evaluatefansifarverfastmapfontawesomefsgenericsggplot2gluegtablehighrhtmltoolshtmlwidgetshttpuvhttrisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopenssloutlierspillarpkgconfigplotlypromisesproxypurrrR6rappdirsRColorBrewerRcpprlangrmarkdownsassscalesshinyshinydashboardsourcetoolsstringistringrsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableyaml